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Crystal Structure of an Arabidopsis Thaliana Putative Steroid Sulfotransferase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other built from MAD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 MICROBATCH 6 297 Sodium Malonate, MES, pH 6.0, Micro-Batch, temperature 297K
Crystal Properties Matthews coefficient Solvent content 2.89 57.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 91.477 α = 90 b = 120.899 β = 90 c = 74.315 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 90 CCD MARRESEARCH Bent cylindrical Si-mirror (Rh coating) 2003-06-27 M MAD 2 1 x-ray 90 M SINGLE WAVELENGTH 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-ID-B 0.979 APS 14-ID-B 2 SYNCHROTRON APS BEAMLINE 14-ID-B 1.127 APS 14-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.9 50 99.2 0.048 0.048 43.02 7.3 32697 32697 40.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.9 1.97 98.8 0.336 0.336 5.07 6.6 3191
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT built from MAD 1.9 20 32697 30975 1654 99.28 0.191 0.19301 0.19147 0.22171 0.2336 RANDOM 32.419
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.47 3 -1.53
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.976 r_scangle_it 4.747 r_scbond_it 2.941 r_mcangle_it 2.207 r_angle_refined_deg 1.903 r_mcbond_it 1.254 r_angle_other_deg 0.948 r_symmetry_hbond_refined 0.376 r_symmetry_vdw_other 0.312 r_nbd_other 0.242
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.976 r_scangle_it 4.747 r_scbond_it 2.941 r_mcangle_it 2.207 r_angle_refined_deg 1.903 r_mcbond_it 1.254 r_angle_other_deg 0.948 r_symmetry_hbond_refined 0.376 r_symmetry_vdw_other 0.312 r_nbd_other 0.242 r_nbd_refined 0.218 r_symmetry_vdw_refined 0.197 r_xyhbond_nbd_refined 0.183 r_chiral_restr 0.116 r_nbtor_other 0.091 r_bond_refined_d 0.02 r_gen_planes_other 0.019 r_gen_planes_refined 0.014 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2302 Nucleic Acid Atoms Solvent Atoms 214 Heterogen Atoms 7
Software Software Software Name Purpose MAR345 data collection SCALEPACK data scaling SOLVE phasing RESOLVE model building REFMAC refinement RESOLVE phasing