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Modulation of agrin function by alternative splicing and Ca2+ binding
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.5 276 PEG 8000, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 276K
Crystal Properties Matthews coefficient Solvent content 1.96 37.37
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.169 α = 90 b = 56.751 β = 127.04 c = 74.889 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B 1.0 EMBL/DESY, HAMBURG BW7B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.78 30.9 99.2 0.102 13.5 3.2 8472
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.8 20 8056 394 100 0.2399 0.2384 0.27105 RANDOM 22.696
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.41 -3.6 0.95 -4.88
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 16.994 r_scangle_it 2.724 r_dihedral_angle_1_deg 2.383 r_angle_refined_deg 1.605 r_scbond_it 1.6 r_mcangle_it 1.386 r_angle_other_deg 0.808 r_mcbond_it 0.756 r_symmetry_hbond_refined 0.318 r_symmetry_vdw_other 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 16.994 r_scangle_it 2.724 r_dihedral_angle_1_deg 2.383 r_angle_refined_deg 1.605 r_scbond_it 1.6 r_mcangle_it 1.386 r_angle_other_deg 0.808 r_mcbond_it 0.756 r_symmetry_hbond_refined 0.318 r_symmetry_vdw_other 0.308 r_nbd_refined 0.277 r_nbd_other 0.261 r_symmetry_vdw_refined 0.258 r_xyhbond_nbd_other 0.165 r_xyhbond_nbd_refined 0.158 r_chiral_restr 0.084 r_bond_refined_d 0.016 r_gen_planes_refined 0.005 r_gen_planes_other 0.003 r_bond_other_d 0.001 r_nbtor_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2873 Nucleic Acid Atoms Solvent Atoms 75 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling AMoRE phasing