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1.5 A resolution structure of a synthetic DNA hairpin with a stilbenediether linker
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.3 298 MPD, magnesium chloride, cacodylate, pH 6.3, VAPOR DIFFUSION, HANGING DROP, temperature 298K, pH 6.30
Crystal Properties Matthews coefficient Solvent content 1.92 35.95
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 29.89 α = 90 b = 41.86 β = 90 c = 51.1 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD APS-1 MIRRORS 1999-05-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 14.95 93.9 10079
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.5 15 9590 9590 489 93.9 0.206 0.204 0.2212 0.239 0.2632 RANDOM 15.01
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -2.04 2.69 -0.65
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 2.954 r_sphericity_free 2.794 r_sphericity_bonded 2.406 r_scbond_it 2.232 r_angle_refined_deg 1.987 r_rigid_bond_restr 1.653 r_angle_other_deg 1.135 r_nbd_other 0.267 r_symmetry_hbond_refined 0.22 r_symmetry_vdw_other 0.181
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 2.954 r_sphericity_free 2.794 r_sphericity_bonded 2.406 r_scbond_it 2.232 r_angle_refined_deg 1.987 r_rigid_bond_restr 1.653 r_angle_other_deg 1.135 r_nbd_other 0.267 r_symmetry_hbond_refined 0.22 r_symmetry_vdw_other 0.181 r_xyhbond_nbd_refined 0.162 r_nbtor_other 0.159 r_nbd_refined 0.141 r_symmetry_vdw_refined 0.101 r_chiral_restr 0.077 r_gen_planes_refined 0.018 r_bond_refined_d 0.017 r_bond_other_d 0.003 r_dihedral_angle_1_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_mcbond_it r_mcangle_it
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 536 Solvent Atoms 170 Heterogen Atoms 5
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing