1PKY

PYRUVATE KINASE FROM E. COLI IN THE T-STATE


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.8456.74

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 73.911α = 90
b = 129.577β = 90
c = 241.37γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100MARRESEARCH1994-10-20M
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE X110.92EMBL/DESY, HAMBURGX11

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.51099.90.088877917

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTION2.567230599.90.2030.30543
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_orthonormal_tor23
p_staggered_tor22.4
p_scangle_it4.3
p_planar_tor4
p_mcangle_it3.2
p_scbond_it2.9
p_mcbond_it2
p_multtor_nbd0.213
p_singtor_nbd0.199
p_chiral_restr0.114
RMS Deviations
KeyRefinement Restraint Deviation
p_orthonormal_tor23
p_staggered_tor22.4
p_scangle_it4.3
p_planar_tor4
p_mcangle_it3.2
p_scbond_it2.9
p_mcbond_it2
p_multtor_nbd0.213
p_singtor_nbd0.199
p_chiral_restr0.114
p_planar_d0.042
p_angle_d0.035
p_plane_restr0.02
p_bond_d0.016
p_angle_deg
p_hb_or_metal_coord
p_xhyhbond_nbd
p_xyhbond_nbd
p_transverse_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms13632
Nucleic Acid Atoms
Solvent Atoms520
Heterogen Atoms

Software

Software
Software NamePurpose
PROLSQrefinement
DENZOdata reduction