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Structure of human dCK complexed with gemcitabine and ADP-MG
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 9 298 20%(w/v)PEG1K, 100mM magnesium acetate, 100mM TRIS, 5mM gemcitabine, 5mM ADP, 5mM MgCl2, 5mM DTT, pH 9.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.53 51.34
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 81.2 α = 90 b = 81.2 β = 90 c = 94.6 γ = 90
Symmetry Space Group P 43 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD MARRESEARCH 2002-11-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.0000 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30 0.054 24.2 11.9 25412 30.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 1.95 0.533 4.7
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.9 20 22863 2549 99.51 0.18171 0.17892 0.1869 0.20713 0.2194 RANDOM 31.92
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.46 1.46 -2.92
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.912 r_scangle_it 4.879 r_scbond_it 3.089 r_mcangle_it 2.213 r_angle_refined_deg 1.78 r_mcbond_it 1.26 r_angle_other_deg 0.954 r_symmetry_vdw_other 0.32 r_nbd_other 0.244 r_nbd_refined 0.216
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.912 r_scangle_it 4.879 r_scbond_it 3.089 r_mcangle_it 2.213 r_angle_refined_deg 1.78 r_mcbond_it 1.26 r_angle_other_deg 0.954 r_symmetry_vdw_other 0.32 r_nbd_other 0.244 r_nbd_refined 0.216 r_symmetry_hbond_refined 0.179 r_xyhbond_nbd_refined 0.142 r_symmetry_vdw_refined 0.13 r_chiral_restr 0.112 r_nbtor_other 0.082 r_bond_refined_d 0.021 r_gen_planes_other 0.013 r_gen_planes_refined 0.011 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1892 Nucleic Acid Atoms Solvent Atoms 144 Heterogen Atoms 46
Software Software Software Name Purpose REFMAC refinement XDS data scaling SOLVE phasing