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Structure of human dCK complexed with 2'-Deoxycytidine and ADP, Space group C 2 2 21
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 298 0.95-1.0M citrate trisodium dihydrate, 100mM Hepes, 5mM deoxycytidine, 5mM ADP, 5mM MgCl2,5mM DTT, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 2.24 44.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.714 α = 90 b = 132.808 β = 90 c = 157.565 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD MARRESEARCH 2001-12-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-BM-D 0.9000 APS 14-BM-D
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.96 30 0.045 23.7 6.9 39365 25
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.96 2 0.291 3.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.96 30 35428 3936 98.67 0.16491 0.16066 0.1733 0.2035 0.2092 RANDOM 26.099
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.05 0.43 -0.38
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.22 r_scangle_it 4.522 r_scbond_it 2.893 r_mcangle_it 2.104 r_angle_refined_deg 1.922 r_angle_other_deg 1.254 r_mcbond_it 1.158 r_symmetry_hbond_refined 0.401 r_symmetry_vdw_refined 0.3 r_symmetry_vdw_other 0.294
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.22 r_scangle_it 4.522 r_scbond_it 2.893 r_mcangle_it 2.104 r_angle_refined_deg 1.922 r_angle_other_deg 1.254 r_mcbond_it 1.158 r_symmetry_hbond_refined 0.401 r_symmetry_vdw_refined 0.3 r_symmetry_vdw_other 0.294 r_nbd_other 0.245 r_nbd_refined 0.216 r_xyhbond_nbd_refined 0.191 r_chiral_restr 0.107 r_nbtor_other 0.089 r_bond_refined_d 0.02 r_gen_planes_refined 0.01 r_gen_planes_other 0.007 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3819 Nucleic Acid Atoms Solvent Atoms 333 Heterogen Atoms 86
Software Software Software Name Purpose REFMAC refinement XDS data scaling AMoRE phasing