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Crystal structure of rat CUTA1 at 2.15 A resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1NAQ
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 4.6 298 Na Acetate, CuSO4, CaCl2, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.53 51.04
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 70.387 α = 90 b = 88.287 β = 90 c = 125.853 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 Diamond (111), Ge(220) 2003-02-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.9322 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.15 20 0.073 0.073 5.3 6.5 43312 43312
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.15 2.2 99.9 0.47 0.47 1.8 4.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1NAQ 2.15 20 41116 39701 3615 100 0.1954 0.18946 0.2064 0.26001 RANDOM 57.5
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.19 -1.98 -4.2
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 10.004 r_scangle_it 7.774 r_scbond_it 4.863 r_mcangle_it 3.294 r_angle_refined_deg 2.685 r_mcbond_it 1.832 r_symmetry_hbond_refined 0.359 r_nbd_refined 0.278 r_symmetry_vdw_refined 0.258 r_chiral_restr 0.23
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 10.004 r_scangle_it 7.774 r_scbond_it 4.863 r_mcangle_it 3.294 r_angle_refined_deg 2.685 r_mcbond_it 1.832 r_symmetry_hbond_refined 0.359 r_nbd_refined 0.278 r_symmetry_vdw_refined 0.258 r_chiral_restr 0.23 r_xyhbond_nbd_refined 0.22 r_bond_refined_d 0.034 r_gen_planes_refined 0.013 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5090 Nucleic Acid Atoms Solvent Atoms 405 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling MOLREP phasing