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Mistletoe Lectin I from Viscum album complexed with galactose
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2AAI Ricin (PDB 2AAI)
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 3.4 293 0.9M Ammonium sulphate, Glycine buffer, pH 3.4, 0.1M galactose, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 4.51 72.52
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 107.65 α = 90 b = 107.65 β = 90 c = 311.92 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 1998-06-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX7.2 1.488 SRS PX7.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.9 40.2 98 0.069 8.8 2.8 24175 24175
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT Ricin (PDB 2AAI) 3 40.2 21899 21899 1117 98 0.201 0.201 0.199 0.1969 0.24 0.2319 RANDOM 40.8
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 7.16 12.89 7.16 -14.31
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 26 c_scangle_it 2.58 c_mcangle_it 2.03 c_angle_deg 1.7 c_scbond_it 1.54 c_improper_angle_d 1.46 c_mcbond_it 1.14 c_bond_d 0.011
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3976 Nucleic Acid Atoms Solvent Atoms 47 Heterogen Atoms 108
Software Software Software Name Purpose CNS refinement DENZO data reduction CCP4 data scaling AMoRE phasing