1OOW

The crystal structure of the spinach plastocyanin double mutant G8D/L12E gives insight into its low reactivity towards photosystem 1 and cytochrome f


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP4.530032% PEG 3350, 0.25M MgCl2, 0.1M Na-ascorbate, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 300K
Crystal Properties
Matthews coefficientSolvent content
2.3246.6

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 74.761α = 90
b = 74.761β = 90
c = 31.383γ = 120
Symmetry
Space GroupP 31 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2001-05-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONMAX II BEAMLINE I7110.991MAX III711

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
1219.28910.07921.8810.869386400-3226.7
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
22.191.60.2987.067.6860

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1AG6219.28-36244624469299.340.18810.18810.183220.23232RANDOM21.337
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.23-0.62-1.231.85
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.994
r_scangle_it4.694
r_scbond_it2.824
r_mcangle_it2.017
r_angle_refined_deg1.693
r_mcbond_it1.158
r_angle_other_deg0.786
r_symmetry_vdw_refined0.306
r_symmetry_vdw_other0.289
r_nbd_other0.245
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.994
r_scangle_it4.694
r_scbond_it2.824
r_mcangle_it2.017
r_angle_refined_deg1.693
r_mcbond_it1.158
r_angle_other_deg0.786
r_symmetry_vdw_refined0.306
r_symmetry_vdw_other0.289
r_nbd_other0.245
r_nbd_refined0.207
r_xyhbond_nbd_refined0.187
r_symmetry_hbond_refined0.133
r_nbtor_other0.091
r_chiral_restr0.088
r_bond_refined_d0.019
r_gen_planes_refined0.007
r_gen_planes_other0.005
r_bond_other_d0.002
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms738
Nucleic Acid Atoms
Solvent Atoms40
Heterogen Atoms1

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata reduction
XSCALEdata scaling