1ONF

Crystal structure of Plasmodium falciparum Glutathione reductase


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
19pH 9.0
Crystal Properties
Matthews coefficientSolvent content
2.5551.31

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 90.64α = 90
b = 90.64β = 90
c = 123.32γ = 90
Symmetry
Space GroupP 41 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100 MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 5.0.2ALS5.0.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.63098.713.57.516434
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.62.7899.94.1

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 3GRS2.629.361643414029157595.780.259810.255580.2969RANDOM50.087
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.060.06-0.13
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg21.783
r_dihedral_angle_1_deg4.476
r_scangle_it3.481
r_scbond_it2.259
r_angle_refined_deg2.093
r_mcangle_it1.187
r_mcbond_it0.662
r_nbd_refined0.318
r_symmetry_vdw_refined0.219
r_symmetry_hbond_refined0.191
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg21.783
r_dihedral_angle_1_deg4.476
r_scangle_it3.481
r_scbond_it2.259
r_angle_refined_deg2.093
r_mcangle_it1.187
r_mcbond_it0.662
r_nbd_refined0.318
r_symmetry_vdw_refined0.219
r_symmetry_hbond_refined0.191
r_xyhbond_nbd_refined0.189
r_chiral_restr0.142
r_bond_refined_d0.018
r_gen_planes_refined0.007
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3457
Nucleic Acid Atoms
Solvent Atoms43
Heterogen Atoms52

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
CNSphasing