1OIH

Crystal structure of the alkylsulfatase AtsK, a non-heme Fe(II) alphaketoglutarate dependent Dioxygenase


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
15.625 MM NA ACETATE, 25 MM NA CITRATE PH 5.6, 7% PEG 4000, 30% GLYCEROL
Crystal Properties
Matthews coefficientSolvent content
3.1560

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 72.242α = 90
b = 145.344β = 90
c = 159.457γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCHPREMIRROR, TRIANGULAR MONOCHROMATOR, BENT MIRRORMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE BW7BEMBL/DESY, HAMBURGBW7B

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.892099.60.04819.215.34134420
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.89299.90.35664.324.15

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSIRASTHROUGHOUT1.8920125806672099.20.1710.170.191RANDOM26.25
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.651.050.6
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.654
r_scangle_it6.073
r_scbond_it4.032
r_mcangle_it3.187
r_mcbond_it1.926
r_angle_refined_deg1.7
r_angle_other_deg0.903
r_symmetry_vdw_other0.261
r_nbd_other0.26
r_nbd_refined0.222
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.654
r_scangle_it6.073
r_scbond_it4.032
r_mcangle_it3.187
r_mcbond_it1.926
r_angle_refined_deg1.7
r_angle_other_deg0.903
r_symmetry_vdw_other0.261
r_nbd_other0.26
r_nbd_refined0.222
r_symmetry_hbond_refined0.208
r_symmetry_vdw_refined0.182
r_metal_ion_refined0.143
r_xyhbond_nbd_refined0.135
r_chiral_restr0.113
r_nbtor_other0.087
r_bond_refined_d0.02
r_gen_planes_other0.014
r_gen_planes_refined0.012
r_bond_other_d0.002
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_mcangle_other
r_scbond_other
r_scangle_other
r_long_range_B_refined
r_long_range_B_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7637
Nucleic Acid Atoms
Solvent Atoms760
Heterogen Atoms4

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
SHELXDphasing
DMphasing
REFMACrefinement