☰ Navigation Tabs
Oxidation state of protein tyrosine phosphatase 1B
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1C83 PDB ENTRY 1C83
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 12-18% PEG4000, 0.1M HEPES PH 7.5, 0.2M MAGNESIUM ACETATE, 10MM DTT
Crystal Properties Matthews coefficient Solvent content 3.1 59.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.686 α = 90 b = 87.686 β = 90 c = 103.721 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.1 SRS PX14.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.2 76 98.9 0.05 7.8 3.5 23591
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.2 2.32 97.4 0.26 2.8 3.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1C83 2.2 76.7 22381 1205 98.6 0.185 0.182 0.233 RANDOM 34.52
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.97 0.48 0.97 -1.45
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.734 r_scangle_it 5.066 r_mcangle_it 3.811 r_scbond_it 3.275 r_mcbond_it 2.393 r_angle_refined_deg 1.301 r_angle_other_deg 0.795 r_symmetry_vdw_other 0.275 r_nbd_other 0.236 r_symmetry_hbond_refined 0.222
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 5.734 r_scangle_it 5.066 r_mcangle_it 3.811 r_scbond_it 3.275 r_mcbond_it 2.393 r_angle_refined_deg 1.301 r_angle_other_deg 0.795 r_symmetry_vdw_other 0.275 r_nbd_other 0.236 r_symmetry_hbond_refined 0.222 r_xyhbond_nbd_refined 0.206 r_nbd_refined 0.196 r_symmetry_vdw_refined 0.183 r_nbtor_other 0.084 r_chiral_restr 0.076 r_bond_refined_d 0.012 r_gen_planes_refined 0.006 r_gen_planes_other 0.006 r_bond_other_d 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2297 Nucleic Acid Atoms Solvent Atoms 195 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling AMoRE phasing