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Holliday Junction Resolving Enzyme
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OB8 PDB ENTRY 1OB8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 293 0.1M HEPES PH 7.5,2.0M AMMONIUM FORMATE,PASSED THROUGH MOTHER LIQUOR WITH 20%ETHYLENE GLYCOL,293K
Crystal Properties Matthews coefficient Solvent content 4.07 69.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 76.57 α = 90 b = 76.57 β = 90 c = 88.944 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU IMAGE PLATE OSMIC MIRRORS 2002-09-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 30 97.8 0.079 11.9 2.96 50200
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 95.9 0.544 2.46
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1OB8 2 27.63 16088 855 97.7 0.2 0.24 0.2573 RANDOM 35.18
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.276 r_scangle_it 3.483 r_scbond_it 2.025 r_mcangle_it 1.563 r_angle_refined_deg 1.313 r_mcbond_it 0.852 r_angle_other_deg 0.782 r_symmetry_hbond_refined 0.27 r_nbd_other 0.228 r_nbd_refined 0.211
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.276 r_scangle_it 3.483 r_scbond_it 2.025 r_mcangle_it 1.563 r_angle_refined_deg 1.313 r_mcbond_it 0.852 r_angle_other_deg 0.782 r_symmetry_hbond_refined 0.27 r_nbd_other 0.228 r_nbd_refined 0.211 r_symmetry_vdw_other 0.21 r_xyhbond_nbd_refined 0.208 r_symmetry_vdw_refined 0.107 r_nbtor_other 0.084 r_chiral_restr 0.076 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d 0.003 r_gen_planes_other 0.002 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 995 Nucleic Acid Atoms Solvent Atoms 151 Heterogen Atoms 25
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing