1O5Z

Crystal structure of Folylpolyglutamate synthase (TM0166) from Thermotoga maritima at 2.10 A resolution


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION,SITTING DROP,NANODROP6.72770.2 M Potassium Sulfate, 20% w/v/ PEG 3350, pH6.7, VAPOR DIFFUSION,SITTING DROP,NANODROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.855.67

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 84.751α = 90
b = 84.751β = 90
c = 280.679γ = 120
Symmetry
Space GroupP 61 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC2003-06-25MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 5.0.3ALS5.0.3

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.1501000.06822.25.57331883318846.92
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.12.1861.610.5112.573.862163

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1fgs2.135.1931388167692.10.18420.181070.24421RANDOM42.889
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-1.56-0.78-1.562.34
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.637
r_dihedral_angle_3_deg17.419
r_dihedral_angle_4_deg14.719
r_dihedral_angle_1_deg6.666
r_scangle_it3.403
r_scbond_it2.215
r_angle_refined_deg1.69
r_mcangle_it1.349
r_mcbond_it0.945
r_angle_other_deg0.878
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg37.637
r_dihedral_angle_3_deg17.419
r_dihedral_angle_4_deg14.719
r_dihedral_angle_1_deg6.666
r_scangle_it3.403
r_scbond_it2.215
r_angle_refined_deg1.69
r_mcangle_it1.349
r_mcbond_it0.945
r_angle_other_deg0.878
r_symmetry_vdw_other0.312
r_symmetry_hbond_refined0.29
r_symmetry_vdw_refined0.287
r_nbd_refined0.227
r_xyhbond_nbd_refined0.214
r_nbd_other0.19
r_chiral_restr0.094
r_nbtor_other0.093
r_bond_refined_d0.018
r_gen_planes_refined0.006
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3362
Nucleic Acid Atoms
Solvent Atoms323
Heterogen Atoms31

Software

Software
Software NamePurpose
HKL-2000data collection
DENZOdata reduction
SCALEPACKdata scaling
MOLREPphasing
REFMACrefinement
HKL-2000data reduction