1O20

Crystal structure of Gamma-glutamyl phosphate reductase (TM0293) from Thermotoga maritima at 2.00 A resolution


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
18.429315% PEG MME 5000(30%), 0.06M Tris Cl(1M), 0.04M Tris_base(1M), VAPOR DIFFUSION,SITTING DROP,NANODROP, pH 8.40, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.5751.67

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 105.15α = 90
b = 111.33β = 90
c = 86.83γ = 90
Symmetry
Space GroupC 2 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM2002-09-20MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 5.0.20.9793, 0.9566, 0.9794ALS5.0.2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12501000.08720.468.5534597
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.0799.50.6073.337.44

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT238.2230837252195.90.1630.160.203RANDOM18.69
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.391.02-0.64
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.116
r_scangle_it4.321
r_scbond_it2.55
r_angle_refined_deg1.532
r_mcangle_it1.49
r_angle_other_deg0.843
r_mcbond_it0.816
r_symmetry_vdw_other0.357
r_symmetry_hbond_refined0.337
r_nbd_other0.244
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.116
r_scangle_it4.321
r_scbond_it2.55
r_angle_refined_deg1.532
r_mcangle_it1.49
r_angle_other_deg0.843
r_mcbond_it0.816
r_symmetry_vdw_other0.357
r_symmetry_hbond_refined0.337
r_nbd_other0.244
r_nbd_refined0.202
r_xyhbond_nbd_refined0.178
r_symmetry_vdw_refined0.145
r_chiral_restr0.093
r_nbtor_other0.087
r_bond_refined_d0.016
r_gen_planes_refined0.007
r_gen_planes_other0.006
r_bond_other_d0.002
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_hbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3227
Nucleic Acid Atoms
Solvent Atoms299
Heterogen Atoms

Software

Software
Software NamePurpose
MOSFLMdata reduction
CCP4data reduction
SCALEPACKdata scaling
SOLVEphasing
RESOLVEmodel building
REFMACrefinement
CCP4data scaling
RESOLVEphasing