☰ Navigation Tabs
Ligand-linked transitions of deoxyHbI crystals exposed to CO.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4SDH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 SMALL TUBES 8.5 296 Sodium and Postasium phosphate, pH 8.5, SMALL TUBES, temperature 296K
Crystal Properties Matthews coefficient Solvent content 2.1 40.87
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 92.04 α = 90 b = 44.28 β = 90 c = 144.03 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 296 IMAGE PLATE RIGAKU RAXIS IV Osmic mirrors 2002-07-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.85 40 95.2 0.084 0.084 12 3.4 24623 24623 25.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.85 1.92 87.8 0.321 0.321
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 4SDH 1.85 39.9 24623 24551 1189 95.8 0.19 0.189 0.189 0.1784 0.21 0.2018 RANDOM 26.6
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 9.52 -6.34 -3.18
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 18.2 c_scangle_it 4.41 c_scbond_it 3.01 c_mcangle_it 2.19 c_mcbond_it 1.67 c_improper_angle_d 1.11 c_angle_deg 1 c_bond_d 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2283 Nucleic Acid Atoms Solvent Atoms 127 Heterogen Atoms 90
Software Software Software Name Purpose CNS refinement SCALEPACK data scaling CNS phasing