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Crystal structure of MnMn Concanavalin A
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1NLS PDB ENTRY 1NLS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 Gel Acupuncture Method (GAME) 8 293 PEG 6000, Sodium Chloride, Calcium Chloride, Manganese Chloride, Sodium Azide, Tris-HCl , pH 8, Gel Acupuncture Method (GAME), temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.24 61.78
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.3 α = 90 b = 118 β = 90 c = 249.5 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 AREA DETECTOR MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B 0.8423 EMBL/DESY, HAMBURG BW7B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.84 19.61 87.5 0.021 34.6 2.88 120751 120751 21.67
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 2 66.8 0.052 16.71 2.57 24782
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1NLS 1.9 19 111372 111372 11146 95 0.184 0.1836 0.201 0.2014 RANDOM 18.96
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.75 -3.32 1.56
RMS Deviations Key Refinement Restraint Deviation x_torsion_deg 25.9 x_scangle_it 2.77 x_scbond_it 1.88 x_mcangle_it 1.83 x_angle_deg 1.7 x_torsion_impr_deg 1.32 x_mcbond_it 1.17 x_bond_d 0.007
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7236 Nucleic Acid Atoms Solvent Atoms 764 Heterogen Atoms 210
Software Software Software Name Purpose CNS refinement MAR345 data collection XDS data scaling AMoRE phasing