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NADH OXIDASE FROM THERMUS THERMOPHILUS
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model Other MODEL FROM ISOMORPHOUS REPLACEMENT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6 0.05 M MES-TRIS BUFFER PH 6.0, 26 % PEG 4000, 0.3 M NACL, 50 MM FMN
Crystal Properties Matthews coefficient Solvent content 2.4 47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 62.53 α = 90 b = 60.6 β = 90 c = 56.66 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 283 IMAGE PLATE MARRESEARCH MIRRORS 1993-11-10 M
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON MPG/DESY, HAMBURG BEAMLINE BW6 MPG/DESY, HAMBURG BW6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.59 96.2 0.071 0.069 6.2 3.9 28064 18.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.59 1.68 95.3 0.071 0.071 3.2 3.8
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION ISOMORPHOUS AND MOLECULAR REPLACEMENT MODEL FROM ISOMORPHOUS REPLACEMENT 1.59 21 28064 28064 96.2 0.1896 0.1823 0.1757 0.20432 23.3
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 29.7 p_staggered_tor 16 p_planar_tor 4.1 p_scangle_it 4.017 p_scbond_it 2.503 p_mcangle_it 2.423 p_mcbond_it 1.651 p_multtor_nbd 0.274 p_singtor_nbd 0.173 p_chiral_restr 0.134
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 29.7 p_staggered_tor 16 p_planar_tor 4.1 p_scangle_it 4.017 p_scbond_it 2.503 p_mcangle_it 2.423 p_mcbond_it 1.651 p_multtor_nbd 0.274 p_singtor_nbd 0.173 p_chiral_restr 0.134 p_planar_d 0.033 p_angle_d 0.031 p_plane_restr 0.0245 p_bond_d 0.016 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_xyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1571 Nucleic Acid Atoms Solvent Atoms 93 Heterogen Atoms 31
Software Software Software Name Purpose X-PLOR model building REFMAC refinement X-PLOR refinement MOSFLM data reduction CCP4 data scaling SCALA data scaling X-PLOR phasing