X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8.527720% Peg 4k, 150mM Na Formate, and 100 mM Tris , pH 8.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.3547.32

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 50.688α = 90
b = 55.639β = 90
c = 88.686γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCH1999-03-30MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSSRL BEAMLINE BL9-11.08SSRLBL9-1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.7528.798.30.0426.87225846222007-3-330.1
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.751.7797.50.5521.7826

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1KLT1.75472583624317123598.390.204990.204990.203040.24524RANDOM within shells30.285
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg19.044
r_dihedral_angle_1_deg5.018
r_scangle_it4.144
r_scbond_it2.609
r_angle_refined_deg1.803
r_mcangle_it1.776
r_angle_other_deg1.218
r_mcbond_it1.023
r_nbtor_other0.621
r_symmetry_hbond_refined0.456
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg19.044
r_dihedral_angle_1_deg5.018
r_scangle_it4.144
r_scbond_it2.609
r_angle_refined_deg1.803
r_mcangle_it1.776
r_angle_other_deg1.218
r_mcbond_it1.023
r_nbtor_other0.621
r_symmetry_hbond_refined0.456
r_symmetry_vdw_refined0.377
r_nbd_refined0.246
r_symmetry_vdw_other0.235
r_xyhbond_nbd_refined0.225
r_nbd_other0.211
r_chiral_restr0.146
r_bond_refined_d0.017
r_gen_planes_refined0.007
r_gen_planes_other0.006
r_bond_other_d0.001
r_xyhbond_nbd_other
r_symmetry_hbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1691
Nucleic Acid Atoms
Solvent Atoms153
Heterogen Atoms42

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing