1N8K

Horse Liver Alcohol Dehydrogenase Val292Thr Mutant Complexed to NAD+ and Pyrazole


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17277MPD, pH 7.0, dialysis, temperature 277K, pH 7.00
Crystal Properties
Matthews coefficientSolvent content
2.1341.89

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 44.31α = 91.94
b = 51.38β = 102.97
c = 92.67γ = 109.93
Symmetry
Space GroupP 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2001-12-09MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 17-IDAPS17-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.13200.058322.2218390
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.131.1646.20.1720.1726.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1HLD1.1320277740218390781381.520.144560.143750.16739RANDOM18.194
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.03-0.390.390.940.04-1.06
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_bonded7.728
r_sphericity_free6.172
r_dihedral_angle_1_deg6.037
r_scangle_it5.376
r_scbond_it3.593
r_mcangle_it2.62
r_mcbond_it1.75
r_angle_refined_deg1.699
r_rigid_bond_restr1.539
r_nbd_other0.305
RMS Deviations
KeyRefinement Restraint Deviation
r_sphericity_bonded7.728
r_sphericity_free6.172
r_dihedral_angle_1_deg6.037
r_scangle_it5.376
r_scbond_it3.593
r_mcangle_it2.62
r_mcbond_it1.75
r_angle_refined_deg1.699
r_rigid_bond_restr1.539
r_nbd_other0.305
r_nbd_refined0.212
r_symmetry_vdw_refined0.183
r_symmetry_hbond_refined0.154
r_nbtor_other0.126
r_chiral_restr0.109
r_bond_refined_d0.015
r_gen_planes_refined0.009
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5605
Nucleic Acid Atoms
Solvent Atoms717
Heterogen Atoms102

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing
REFMACrefinement