1N4G

Structure of CYP121, a Mycobacterial P450, in Complex with Iodopyrazole


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.3277ammonium sulphate, pH 6.3, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.4248.87

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 78.717α = 90
b = 78.717β = 90
c = 268.24γ = 120
Symmetry
Space GroupP 65 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2002-06-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE X110.9EMBL/DESY, HAMBURGX11

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.82095.20.0728.14486244862
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.81.8490.6

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1N401.89.98425784257822841000.205730.205730.205110.21735RANDOM14.21
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.01
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg12.073
r_dihedral_angle_1_deg5.394
r_scangle_it4.2
r_scbond_it2.605
r_angle_refined_deg1.865
r_angle_other_deg1.603
r_mcangle_it1.437
r_mcbond_it0.821
r_symmetry_vdw_other0.301
r_nbd_other0.268
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg12.073
r_dihedral_angle_1_deg5.394
r_scangle_it4.2
r_scbond_it2.605
r_angle_refined_deg1.865
r_angle_other_deg1.603
r_mcangle_it1.437
r_mcbond_it0.821
r_symmetry_vdw_other0.301
r_nbd_other0.268
r_symmetry_hbond_refined0.228
r_nbd_refined0.215
r_symmetry_vdw_refined0.193
r_xyhbond_nbd_refined0.161
r_chiral_restr0.11
r_nbtor_other0.072
r_bond_refined_d0.022
r_gen_planes_refined0.008
r_bond_other_d0.004
r_gen_planes_other0.004
r_xyhbond_nbd_other
r_symmetry_hbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2946
Nucleic Acid Atoms
Solvent Atoms539
Heterogen Atoms49

Software

Software
Software NamePurpose
HKL-2000data collection
SCALEPACKdata scaling
AMoREphasing
REFMACrefinement
HKL-2000data reduction