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Crystal Structure of Aurora-A Protein Kinase
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1FOT
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 9 293 PEG MME550, NaCl, Bicine, pH 9.0, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.56 51.89
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 80.452 α = 90 b = 80.452 β = 90 c = 172.172 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 Synchrotron 2002-02-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 5.0.3 1.0 ALS 5.0.3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 44 98 0.086 14.5 7.4 32234 28879 2 2 38.15
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.9 1.95 93 0.578 1557
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1FOT 1.9 40 28879 25106 1337 98.45 0.229 0.22689 0.22454 0.27259 RANDOM 38.157
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.14 -0.57 -1.14 1.71
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.693 r_scangle_it 4.161 r_scbond_it 2.459 r_mcangle_it 1.612 r_angle_refined_deg 1.468 r_angle_other_deg 0.839 r_mcbond_it 0.821 r_symmetry_hbond_refined 0.693 r_symmetry_vdw_refined 0.467 r_symmetry_vdw_other 0.308
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 7.693 r_scangle_it 4.161 r_scbond_it 2.459 r_mcangle_it 1.612 r_angle_refined_deg 1.468 r_angle_other_deg 0.839 r_mcbond_it 0.821 r_symmetry_hbond_refined 0.693 r_symmetry_vdw_refined 0.467 r_symmetry_vdw_other 0.308 r_nbd_other 0.243 r_nbd_refined 0.203 r_xyhbond_nbd_refined 0.16 r_nbtor_other 0.091 r_chiral_restr 0.084 r_bond_refined_d 0.013 r_gen_planes_refined 0.007 r_gen_planes_other 0.003 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2105 Nucleic Acid Atoms Solvent Atoms 72 Heterogen Atoms 34
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling AMoRE phasing REFMAC refinement CCP4 data scaling