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PRINCIPLES AND PITFALLS IN DESIGNING SITE DIRECTED PEPTIDE LIGANDS
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 THIS COMPLEX WAS PREPARED BY DIFFUSION OF THE PEPTIDE INTO
A CRYSTAL OF THE DIMER.
Crystal Properties Matthews coefficient Solvent content 3.03 59.47
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.3 α = 90 b = 72.3 β = 90 c = 185.9 γ = 120
Symmetry Space Group P 31 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON 1.0 Photon Factory
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.7 15 8625
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) Mean Isotropic B X-RAY DIFFRACTION 2.7 6 1.5 8625 0.199 0.199
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_orthonormal_tor 27.3 p_staggered_tor 25.2 p_planar_tor 8.4 p_multtor_nbd 0.257 p_xhyhbond_nbd 0.208 p_singtor_nbd 0.186 p_chiral_restr 0.127 p_angle_d 0.028 p_planar_d 0.026 p_bond_d 0.014
RMS Deviations Key Refinement Restraint Deviation p_orthonormal_tor 27.3 p_staggered_tor 25.2 p_planar_tor 8.4 p_multtor_nbd 0.257 p_xhyhbond_nbd 0.208 p_singtor_nbd 0.186 p_chiral_restr 0.127 p_angle_d 0.028 p_planar_d 0.026 p_bond_d 0.014 p_plane_restr 0.011 p_angle_deg p_hb_or_metal_coord p_mcbond_it p_mcangle_it p_scbond_it p_scangle_it p_xyhbond_nbd p_transverse_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3251 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose X-PLOR model building PROLSQ refinement X-PLOR refinement X-PLOR phasing