☰ Navigation Tabs
Crystal structure of oxidized recombinant cytochrome c4 from Pseudomonas stutzeri
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1ETP PDB entry 1ETP
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 6.6 298 0.2M ammonium acetate, 0.1M sodium citrate pH 5.6, 30%(w/v) PEG 4000, pH 6.6, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.76 30.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.96 α = 90 b = 57.64 β = 104.23 c = 84.41 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 IMAGE PLATE MARRESEARCH Osmic mirrors 2000-12-07 M SINGLE WAVELENGTH 2 1 x-ray 100 IMAGE PLATE MARRESEARCH Mirror 2001-01-26 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300 1.54179 2 SYNCHROTRON MAX II BEAMLINE I711 1.03260 MAX II I711
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.25 30 90.9 178812 175219
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.25 1.29 77
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1ETP 1.25 30 171606 152386 8596 88.8 0.1571 0.1571 0.1547 0.1603 0.2021 0.1711 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
Coordinate Error Structure Solution Method Refinement High Resolution Refinement Low Resolution 10 5368 6688
RMS Deviations Key Refinement Restraint Deviation s_similar_dist 0.453 s_approx_iso_adps 0.077 s_non_zero_chiral_vol 0.07 s_zero_chiral_vol 0.063 s_similar_adp_cmpnt 0.048 s_angle_d 0.028 s_anti_bump_dis_restr 0.028 s_from_restr_planes 0.0268 s_bond_d 0.011 s_rigid_bond_adp_cmpnt 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5512 Nucleic Acid Atoms Solvent Atoms 819 Heterogen Atoms 350
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling AMoRE phasing SHELXL-97 refinement