X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP5.6277PEG4000, pH 5.6, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.5451.64

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 69.507α = 90
b = 89.466β = 90
c = 161.658γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCH2001-07-31MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONEMBL/DESY, HAMBURG BEAMLINE X111.0EMBL/DESY, HAMBURGX11

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.252098.10.0530.0539.13.2275836275836
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.251.3193.80.3040.3042.52.338255

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONFOURIER SYNTHESISTHROUGHOUT1QLT1.2540273390273390135098.530.125650.125650.125650.142RANDOM12.756
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.14-0.380.53
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.933
r_sphericity_free11.373
r_dihedral_angle_1_deg4.882
r_sphericity_bonded4.663
r_scangle_it4.586
r_scbond_it3.045
r_mcangle_it2.192
r_angle_refined_deg1.684
r_mcbond_it1.437
r_rigid_bond_restr1.358
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg15.933
r_sphericity_free11.373
r_dihedral_angle_1_deg4.882
r_sphericity_bonded4.663
r_scangle_it4.586
r_scbond_it3.045
r_mcangle_it2.192
r_angle_refined_deg1.684
r_mcbond_it1.437
r_rigid_bond_restr1.358
r_angle_other_deg1.355
r_nbtor_other0.322
r_nbd_refined0.243
r_symmetry_vdw_other0.221
r_symmetry_hbond_refined0.221
r_symmetry_vdw_refined0.2
r_nbd_other0.199
r_xyhbond_nbd_refined0.197
r_xyhbond_nbd_other0.16
r_chiral_restr0.109
r_bond_refined_d0.014
r_gen_planes_refined0.009
r_gen_planes_other0.009
r_bond_other_d0.001
r_symmetry_hbond_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms14068
Nucleic Acid Atoms
Solvent Atoms4266
Heterogen Atoms403

Software

Software
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
REFMACrefinement
CCP4data scaling