1LEY

STRUCTURE OF A DICATIONIC MONOIMIDAZOLE LEXITROPSIN BOUND TO DNA (ORIENTATION 2)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP278VAPOR DIFFUSION, SITTING DROP, temperature 278.00K
Crystal Properties
Matthews coefficientSolvent content
2.0439.85

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 24.03α = 90
b = 39.26β = 90
c = 66.3γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray248DIFFRACTOMETERRIGAKU AFC-5RMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.25

Refinement

Statistics
Diffraction IDStructure Solution MethodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeMean Isotropic B
X-RAY DIFFRACTION2.25822322860.1640.235
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
n_sugar_angle_it6.266
n_phos_angle_it5.843
n_sugar_bond_it5.48
n_phos_bond_it5.343
n_chiral_restr0.144
n_singtor_nbd0.107
n_multtor_nbd0.093
n_phos_bond_angle_d0.069
n_sugar_bond_angle_d0.049
n_phos_bond_d0.03
RMS Deviations
KeyRefinement Restraint Deviation
n_sugar_angle_it6.266
n_phos_angle_it5.843
n_sugar_bond_it5.48
n_phos_bond_it5.343
n_chiral_restr0.144
n_singtor_nbd0.107
n_multtor_nbd0.093
n_phos_bond_angle_d0.069
n_sugar_bond_angle_d0.049
n_phos_bond_d0.03
n_sugar_bond_d0.025
n_plane_restr0.015
n_bond_d
n_angle_d
n_planar_d
n_hb_or_metal_coord
n_bond_angle_restr
n_dihedral_angle_restr
n_impr_tor
n_xhyhbond_nbd
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms
Nucleic Acid Atoms486
Solvent Atoms37
Heterogen Atoms31

Software

Software
Software NamePurpose
NUCLSQrefinement