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NMR Solution Structure of Nogalamycin Intercalation Between Co-Axially Stacked Hairpins
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D NOESY 3mM hairpin; 10mM phosphate, 100mM NaCl;
0.6mM NaN3; 0.6mM Na4 EDTA; 2mM Trimethylisilylpropanoate
D2O D2O 100mM Na+ 10mM PO4- 6.4 ATMOSPHERIC atm 278 2 2D NOESY with WaterGATE suppresion 3mM hairpin; 10mM phosphate, 100mM NaCl;
0.6mM NaN3; 0.6mM Na4 EDTA; 2mM Trimethylisilylpropanoate
10% D2O, 90% H2O 10% D2O, 90% H2O 100mM Na+ 10mM PO4- 6.4 ATMOSPHERIC atm 278 3 DQF-COSY 3mM hairpin; 10mM phosphate, 100mM NaCl;
0.6mM NaN3; 0.6mM Na4 EDTA; 2mM Trimethylisilylpropanoate
D2O D2O 100mM Na+ 10mM PO4- 6.4 ATMOSPHERIC atm 278 4 TOCSY 3mM hairpin; 10mM phosphate, 100mM NaCl;
0.6mM NaN3; 0.6mM Na4 EDTA; 2mM Trimethylisilylpropanoate
D2O D2O 100mM Na+ 10mM PO4- 6.4 ATMOSPHERIC atm 278
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker AVANCE DRX 500 2 Bruker AVANCE 600
NMR Refinement Method Details Software restrained molecular dynamics XwinNMR
NMR Ensemble Information Conformer Selection Criteria Conformers Calculated Total Number Conformers Submitted Total Number 1
Computation: NMR Software # Classification Version Software Name Author 1 collection XwinNMR 2.6-3.1 2 data analysis ANSIG 3.3 3 structure solution Amber 6 4 refinement Amber 6 PEARLMAN,CASE,CALDWELL,ROSS,CHEATHAM,FERGUSON,SEIBEL,SINGH,WEINER,KOLLMAN