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native structure of bovine mitochondrial cytochrome bc1 complex
Crystallization Crystal Properties Matthews coefficient Solvent content 3.66 66.38
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 153.828 α = 90 b = 153.828 β = 90 c = 596.671 γ = 90
Symmetry Space Group I 41 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 5ID-B 1.0 APS 5ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.6 40 104476
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT 2.6 28.99 102423 2075 100 0.26143 0.26067 0.29736 RANDOM 46.374
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.15 1.15 -2.31
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 20.038 r_scangle_it 9.065 r_scbond_it 6.639 r_mcangle_it 2.989 r_dihedral_angle_1_deg 2.961 r_angle_refined_deg 1.853 r_mcbond_it 0.715 r_chiral_restr 0.324 r_symmetry_hbond_refined 0.307 r_nbd_refined 0.229
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 20.038 r_scangle_it 9.065 r_scbond_it 6.639 r_mcangle_it 2.989 r_dihedral_angle_1_deg 2.961 r_angle_refined_deg 1.853 r_mcbond_it 0.715 r_chiral_restr 0.324 r_symmetry_hbond_refined 0.307 r_nbd_refined 0.229 r_symmetry_vdw_refined 0.201 r_xyhbond_nbd_refined 0.192 r_bond_refined_d 0.022 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_symmetry_vdw_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 16444 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms 133
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling CCP4 model building REFMAC refinement CCP4 phasing