1KZ8

CRYSTAL STRUCTURE OF PORCINE FRUCTOSE-1,6-BISPHOSPHATASE COMPLEXED WITH A NOVEL ALLOSTERIC-SITE INHIBITOR


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
17.2pH 7.2
Crystal Properties
Matthews coefficientSolvent content
2.6753.92

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 59.65α = 90
b = 165.94β = 90
c = 79.223γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATERIGAKU RAXIS IICYALE MIRRORS1998-07-24MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RUH2R

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
123097.90.04429.7854052-3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
122.0793.90.2147.774

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONDIFFERENCE FOURIERTHROUGHOUTPDB ID 1FPD23049955268197.430.179180.17730.21445RANDOM23.821
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.62-0.59-1.04
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg19.715
r_scangle_it5.5
r_dihedral_angle_1_deg3.964
r_scbond_it3.535
r_mcangle_it3.016
r_angle_refined_deg2.136
r_mcbond_it1.67
r_angle_other_deg1.197
r_xyhbond_nbd_other0.345
r_symmetry_vdw_other0.234
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg19.715
r_scangle_it5.5
r_dihedral_angle_1_deg3.964
r_scbond_it3.535
r_mcangle_it3.016
r_angle_refined_deg2.136
r_mcbond_it1.67
r_angle_other_deg1.197
r_xyhbond_nbd_other0.345
r_symmetry_vdw_other0.234
r_nbd_refined0.228
r_nbd_other0.221
r_symmetry_hbond_refined0.206
r_symmetry_vdw_refined0.181
r_chiral_restr0.121
r_xyhbond_nbd_refined0.118
r_nbtor_other0.083
r_bond_refined_d0.013
r_gen_planes_refined0.008
r_gen_planes_other0.005
r_bond_other_d0.002
r_symmetry_hbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4882
Nucleic Acid Atoms
Solvent Atoms540
Heterogen Atoms140

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
CCP4model building
REFMACrefinement
CCP4phasing