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Solution structure of the amphipathic domain of YopD from Yersinia
NMR Experiment Experiment Type Sample Contents Solvent Ionic Strength pH Pressure Temperature (K) Spectrometer 1 2D NOESY 3.5 MM YOPD(278-300); 20 MM SODIUM PHOSPHATE BUFFER, PH 4.5; 1 MM SODIUM AZIDE 50% H2O; 10 D2O; 40% TFE 20 mM SODIUM PHOSPHATE BUFFER 4.5 1 atm 313 2 2D TOCSY 3.5 MM YOPD(278-300); 20 MM SODIUM PHOSPHATE BUFFER, PH 4.5; 1 MM SODIUM AZIDE 50% H2O; 10 D2O; 40% TFE 20 mM SODIUM PHOSPHATE BUFFER 4.5 1 atm 313 3 DQF-COSY 3.5 MM YOPD(278-300); 20 MM SODIUM PHOSPHATE BUFFER, PH 4.5; 1 MM SODIUM AZIDE 50% H2O; 10 D2O; 40% TFE 20 mM SODIUM PHOSPHATE BUFFER 4.5 1 atm 313 4 15N HSQC 3.5 MM YOPD(278-300); 20 MM SODIUM PHOSPHATE BUFFER, PH 4.5; 1 MM SODIUM AZIDE 50% H2O; 10 D2O; 40% TFE 20 mM SODIUM PHOSPHATE BUFFER 4.5 1 atm 313 5 13C HSQC 3.5 MM YOPD(278-300); 20 MM SODIUM PHOSPHATE BUFFER, PH 4.5; 1 MM SODIUM AZIDE 50% H2O; 10 D2O; 40% TFE 20 mM SODIUM PHOSPHATE BUFFER 4.5 1 atm 313
NMR Spectrometer Information Spectrometer Manufacturer Model Field Strength 1 Bruker DRX 600 2 Bruker AMX 500
NMR Refinement Method Details Software simulated annealing STANDARD SIMULATED ANNEALING PROTOCOL USING XPLOR 3.851.
DIHEDRAL RESTRAINTS WERE OBTAINED WITH TALOS X-PLOR
NMR Ensemble Information Conformer Selection Criteria structures with acceptable covalent geometry, structures with the least restraint violations,
structures with the lowest energy Conformers Calculated Total Number 150 Conformers Submitted Total Number 1 Representative Model 1 (n/a)
Computation: NMR Software # Classification Version Software Name Author 1 refinement X-PLOR 3.851 Brunger 2 data analysis XwinNMR 2.6 Bruker 3 iterative matrix relaxation MARDIGRAS 3.0 Borgias 4 data analysis TALOS 98.040.21.02 Cornilescu