1K43

10 Structure Ensemble of the 14-residue peptide RG-KWTY-NG-ITYE-GR (MBH12)


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D ROESY1 mM Peptide MBH1290% H2O/10% D2O05.0ambient283
22D NOESY1 mM Peptide MBH12100% D2O05.0ambient283
32D NOESY1 mM Peptide MBH1240% CD3OD, 60% H2O05.0ambient283
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDRX500
NMR Refinement
MethodDetailsSoftware
simulated annealing combined with torsion angle dynamics (DYANA)The structures are based on a total of 70 restraints, 60 are NOE-derived distance constraints and 10 dihedral angle restraints. The pairwise RMSD for residues 3-12 was 0.38 +/- 0.21 A for the backbone and 1.36 +/- 0.35 A for all heavy atoms. The estimated beta-hairpin population of this peptide is 66 +/- 4%. The first and last two residues (RG) are disordered, because they were added just to avoid aggregation. The side chains of Trp4, Tyr6, Ile9 and Tyr11 are interacting in one side of the beta hairpin, forming a hydrophobic cluster. Asn7 at position L1 of the beta-turn is directed outwards from the beta-hairpin, as expected for a type I' beta-turn.XwinNMR
NMR Ensemble Information
Conformer Selection Criteriastructures with the lowest energy
Conformers Calculated Total Number50
Conformers Submitted Total Number10
Representative Model6 (lower rmsd with respect to mean)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionXwinNMR2.6Bruker
2data analysisXwinNMR2.6Bruker
3structure solutionDYANA1.5Guntert, P. et al.
4refinementGROMOS96van Gunsteren