1JY6

B4DIMERA: A DE NOVO DESIGNED FOUR-STRANDED BETA-SHEET ASSEMBLED USING A DISULFIDE BOND


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
12D NOESY1mM B4dimer, trimethylsilylpropionate, 90% H2O, 10% D2O90% H2O/10% D2Ounbuffered3.5ambient323
2DQF-COSY1mM B4dimer, trimethylsilylpropionate, 90% H2O, 10% D2O90% H2O/10% D2Ounbuffered3.5ambient323
3TOCSY1mM B4dimer, trimethylsilylpropionate, 90% H2O, 10% D2O90% H2O/10% D2Ounbuffered3.5ambient323
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1BrukerDRX500
NMR Refinement
MethodDetailsSoftware
torsion angle dynamics/ simulated annealingThe nineteen structures were determined by NMR and torsion angle dynamics/simulated annealing methods. The peptide dimer was treated as a single entity and symmetry elements were not utilized during structure calculations. The structures are based on a total of 276 NOE-derived restraints. The list of constraints is available in the file water_uppercons.txt. Structure calculations were performed with the program DYANA-1.5 (P. Guentert, C. Mumenthaler, K. Wuthrich, J. Mol. Biol.(1997)Vol.273, 283-298). No violation of distance constraints from NOEs exceeded 0.3Angstroms. The ensemble of structures is superimposed over the best-structured region encompasing residues V19-L34. Residues 1-11 were unstructured and their co-ordinates are not given. The average RMSDs between the superposed structures and the average structure are as follows: 1.04(chain A, residues 20-34, backbone atoms) 0.91(chain B, residues 20-34, backbone atoms).DYANA
NMR Ensemble Information
Conformer Selection Criteriastructures with the least restraint violations,structures with the lowest energy
Conformers Calculated Total Number400
Conformers Submitted Total Number19
Representative Model2 (closest to the average)
Additional NMR Experimental Information
DetailsThis structure was determined using standard 2D homonuclear techniques.
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1structure solutionDYANA1.5Guentert
2refinementDYANA1.5Guentert