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Sperm Whale met-Myoglobin (low temperature; high pressure)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1VXH PDB ENTRY 1VXH
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 batch 6 298 ammonium sulfate, pH 6, batch, temperature 298K
Crystal Properties Matthews coefficient Solvent content 1.9 35.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 64.079 α = 90 b = 30.777 β = 105.42 c = 34.404 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 95 CCD ADSC QUANTUM 4 2000-02-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON CHESS BEAMLINE F1 0.9503 CHESS F1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 26 98.5 0.075 4.8 4 14428 14428 14.7
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.67 1.81 97.7 0.096 6.8 3.6 3060
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION THROUGHOUT PDB ENTRY 1VXH 1.7 22.56 2 14237 1372 98.1 0.21 0.2002 0.247 0.2359 RANDOM 15.1
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.69 0.97 -0.52 2.21
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 16.8 c_scangle_it 3.16 c_scbond_it 2.13 c_mcangle_it 1.57 c_mcbond_it 1.14 c_improper_angle_d 1.02 c_angle_deg 1 c_bond_d 0.005 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 16.8 c_scangle_it 3.16 c_scbond_it 2.13 c_mcangle_it 1.57 c_mcbond_it 1.14 c_improper_angle_d 1.02 c_angle_deg 1 c_bond_d 0.005 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1203 Nucleic Acid Atoms Solvent Atoms 158 Heterogen Atoms 68
Software Software Software Name Purpose CNS refinement DPS data reduction CCP4 data scaling CNS phasing