1J5I

Solution Structure of a Novel Chromoprotein Derived from Apo-Neocarzinostatin and a Synthetic Chromophore


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
13D 1H-1H-15N TOCSY1.0 mM u-15N 1, 1.0 mM 2, 25 mM phosphate pH 5.0, 0.1 mM TSP, 0.005% sodium azide w/v80% H2O 10% D2O 10% d4-MeOH25 mM sodium phosphate5.0ambient308
23D 1H-1H-15N NOESY1.0 mM u-15N 1, 1.0 mM 2, 25 mM phosphate pH 5.0, 0.1 mM TSP, 0.005% sodium azide w/v80% H2O 10% D2O 10% d4-MeOH25 mM sodium phosphate5.0ambient308
33D HNHA1.0 mM u-15N 1, 1.0 mM 2, 25 mM phosphate pH 5.0, 0.1 mM TSP, 0.005% sodium azide w/v80% H2O 10% D2O 10% d4-MeOH25 mM sodium phosphate5.0ambient308
43D HNHB1.0 mM u-15N 1, 1.0 mM 2, 25 mM phosphate pH 5.0, 0.1 mM TSP, 0.005% sodium azide w/v80% H2O 10% D2O 10% d4-MeOH25 mM sodium phosphate5.0ambient308
52D 1H-15N HSQC1.0 mM u-15N 1, 1.0 mM 2, 25 mM phosphate pH 5.0, 0.1 mM TSP, 0.005% sodium azide w/v80% H2O 10% D2O 10% d4-MeOH25 mM sodium phosphate5.0ambient308
62D 1H-1H NOESY1.0 mM u-15N 1, 1.0 mM 2, 25 mM phosphate pH 5.0, 0.1 mM TSP, 0.005% sodium azide w/v80% H2O 10% D2O 10% d4-MeOH25 mM sodium phosphate5.0ambient308
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1VarianINOVA600
2VarianUNITYPLUS500
NMR Refinement
MethodDetailsSoftware
Simulated annealing with torsion angle dynamicsRESTRAINTS FOR STRUCTURE CALCULATION: INTERMOLECULAR NOES 20, INTRARESIDUE NOES 173, SEQUENTIAL NOES (I, I + 1) 227, MEDIUM-RANGE NOES (I, I+2 - I+4) 115, LONG-RANGE NOES (I, I>5) 295, PSI ANGLE RESTRAINTS 39, HYDROGEN BONDS 74, DISULPHIDE BONDS 12.VNMR
NMR Ensemble Information
Conformer Selection Criteriastructures with favorable non-bond energy
Conformers Calculated Total Number100
Conformers Submitted Total Number44
Representative Model1 (lowest energy)
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1collectionVNMR6.1cVarian
2processingNMRPipesgi6xDelaglio, F., Grzesiek, S., Vuister, G. W., Zhu, G., Pfeifer, J., and Bax, A.
3analysisXEASY1.3.13Bartels, C., Xia, T. H., Billeter, M., Guntert, P., and Wurthrich, K.
4refinementDYANAGuntert, Mumenthaler, Wurthrich