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Crystal structure of the conserved hypothetical protein TT1751 from Thermus thermophilus HB8
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 Microbatch Crystallization 5.6 293 PEGMME 5000, Ammonium Sulfate, pH 5.6, Microbatch Crystallization, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.34 47.51
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 41.603 α = 90 b = 78.811 β = 116.64 c = 44.688 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH monochromator 2002-02-04 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44B2 0.9804, 0.9808, 0.9825, 0.9720 SPring-8 BL44B2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 97.9 0.036 16.8 4.1 16980 70405
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2 2.07 83.8 0.138
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 2 20 15778 819 100 0.19694 0.19365 0.25884 RANDOM 29.423
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.19 1.97 -0.56 2.13
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.12 r_dihedral_angle_1_deg 5.711 r_scbond_it 3.8 r_mcangle_it 2.247 r_angle_refined_deg 2.15 r_mcbond_it 1.27 r_symmetry_vdw_refined 0.297 r_nbd_refined 0.235 r_symmetry_hbond_refined 0.224 r_xyhbond_nbd_refined 0.208
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 6.12 r_dihedral_angle_1_deg 5.711 r_scbond_it 3.8 r_mcangle_it 2.247 r_angle_refined_deg 2.15 r_mcbond_it 1.27 r_symmetry_vdw_refined 0.297 r_nbd_refined 0.235 r_symmetry_hbond_refined 0.224 r_xyhbond_nbd_refined 0.208 r_chiral_restr 0.171 r_bond_refined_d 0.024 r_gen_planes_refined 0.009 r_bond_other_d r_angle_other_deg r_dihedral_angle_2_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_symmetry_vdw_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1924 Nucleic Acid Atoms Solvent Atoms 112 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing