1IZ1

CRYSTAL STRUCTURE OF CBNR, A LYSR FAMILY TRANSCRIPTIONAL REGULATOR


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP8293Magnesium sulfate, Sodium chloride, Tris-HCl, pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties
Matthews coefficientSolvent content
2.6653.41

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 65.271α = 90
b = 124.477β = 90
c = 166.818γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42001-03-22MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSPRING-8 BEAMLINE BL40B20.9797SPring-8BL40B2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.543.598.10.0930.09364.5469504683542.9
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.52.6473.90.3890.3891.83.1284

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1IXC2.5504787544422237497.750.225450.225450.222180.28616RANDOM30.719
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.330.72-1.05
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.787
r_scangle_it2.82
r_scbond_it1.568
r_angle_refined_deg1.441
r_mcangle_it1.177
r_angle_other_deg0.819
r_mcbond_it0.624
r_symmetry_vdw_other0.25
r_nbd_other0.221
r_nbd_refined0.198
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg6.787
r_scangle_it2.82
r_scbond_it1.568
r_angle_refined_deg1.441
r_mcangle_it1.177
r_angle_other_deg0.819
r_mcbond_it0.624
r_symmetry_vdw_other0.25
r_nbd_other0.221
r_nbd_refined0.198
r_symmetry_vdw_refined0.181
r_xyhbond_nbd_refined0.166
r_symmetry_hbond_refined0.165
r_nbtor_other0.086
r_chiral_restr0.078
r_bond_refined_d0.014
r_gen_planes_refined0.005
r_bond_other_d0.002
r_gen_planes_other0.002
r_dihedral_angle_2_deg
r_xyhbond_nbd_other
r_symmetry_hbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms8982
Nucleic Acid Atoms
Solvent Atoms115
Heterogen Atoms

Software

Software
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
AMoREphasing
REFMACrefinement
CCP4data scaling