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Crystal structure of the transthyretin mutant TTR C10A/Y114C
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1F41 PDB ENTRY 1F41
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 5 298 40% PEG 550 monomethyl ether, 0.1M sodium citrate, 0.1M ammonium sulphate, 0.1% BME,
pH 5.0, VAPOR DIFFUSION, HANGING DROP at 298K, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 2.18 43.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 43.15 α = 90 b = 85.235 β = 90 c = 64.797 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2000-07-31 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 0.934 ESRF BM14
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 20 98.1 0.034 24.5 3.3 26695 26695 21.3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.76 93 0.222 4.7 2.8 2479
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION FOURIER SYNTHESIS THROUGHOUT PDB ENTRY 1F41 1.7 19.92 23858 23858 2665 100 0.2072 0.2072 0.2038 0.237 RANDOM 19.71
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.15 0.25 -0.39
RMS Deviations Key Refinement Restraint Deviation p_multtor_nbd 15.333 p_singtor_nbd 3.866 p_scangle_it 3.618 p_scbond_it 2.146 p_mcangle_it 1.439 p_angle_d 1.268 p_mcbond_it 0.764 p_xhyhbond_nbd 0.199 p_xyhbond_nbd 0.171 p_chiral_restr 0.083
RMS Deviations Key Refinement Restraint Deviation p_multtor_nbd 15.333 p_singtor_nbd 3.866 p_scangle_it 3.618 p_scbond_it 2.146 p_mcangle_it 1.439 p_angle_d 1.268 p_mcbond_it 0.764 p_xhyhbond_nbd 0.199 p_xyhbond_nbd 0.171 p_chiral_restr 0.083 p_bond_d 0.008 p_plane_restr 0.004 p_planar_d p_hb_or_metal_coord p_planar_tor p_staggered_tor p_orthonormal_tor p_transverse_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1771 Nucleic Acid Atoms Solvent Atoms 216 Heterogen Atoms 24
Software Software Software Name Purpose DENZO data reduction SCALEPACK data scaling REFMAC refinement