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Molybdate bound complex of Dimop domain of ModE from E.coli
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1B9N PDB ENTRY 1B9N
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.6 pH 7.60
Crystal Properties Matthews coefficient Solvent content 2.18 43.68
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 72.34 α = 90 b = 73.34 β = 90 c = 49.56 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV MIRRORS M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU200
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 30 97.9 0.49 27.8 9 20410 27
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1B9N 1.82 20 22803 1182 98.1 0.188 0.234 RANDOM 34.2
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 29.09 p_staggered_tor 14.021 p_planar_tor 3.109 p_scangle_it 2.825 p_mcangle_it 2.266 p_scbond_it 1.777 p_mcbond_it 1.72 p_xhyhbond_nbd 0.255 p_multtor_nbd 0.219 p_singtor_nbd 0.182
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 29.09 p_staggered_tor 14.021 p_planar_tor 3.109 p_scangle_it 2.825 p_mcangle_it 2.266 p_scbond_it 1.777 p_mcbond_it 1.72 p_xhyhbond_nbd 0.255 p_multtor_nbd 0.219 p_singtor_nbd 0.182 p_xyhbond_nbd 0.133 p_chiral_restr 0.126 p_planar_d 0.03 p_angle_d 0.029 p_plane_restr 0.029 p_bond_d 0.01 p_angle_deg p_hb_or_metal_coord p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2063 Nucleic Acid Atoms Solvent Atoms 227 Heterogen Atoms 10
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing