1H9L

PORCINE PANCREATIC ELASTASE COMPLEXED WITH ACETYL-VAL-GLU-PRO-ILE-COOH


X-RAY DIFFRACTION

Starting Model(s)

Initial Refinement Model(s)
TypeSourceAccession CodeDetails
experimental modelPDB 1QIXPDB ENTRY 1QIX

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
15CRYSTALS PREPARED FROM 25MM SODIUM SULPHATE, 25MM SODIUM ACETATE (PH 5.0), 25 MG/ML PPE AND THEN SOAKED WITH ACETYL-VAL-GLU-PRO-ILE (17 MG/ML) DISSOLVED IN SODIUM ACETATE (PH 5.0, 50MM) AND SODIUM SULPHATE (25 MM)
Crystal Properties
Matthews coefficientSolvent content
1.8332.15

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 50.16α = 90
b = 57.84β = 90
c = 74.32γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCH1998-06-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONSRS BEAMLINE PX9.6SRSPX9.6

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6722.995.20.072156.32494413.8
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.671.796.70.2510

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1QIX1.6722.924944101995.20.1590.1580.199RANDOM15.5
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
-0.730.390.34
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor19.4
p_staggered_tor13.3
p_scangle_it4.101
p_planar_tor3.9
p_scbond_it2.714
p_mcangle_it2.009
p_mcbond_it1.253
p_multtor_nbd0.25
p_singtor_nbd0.177
p_chiral_restr0.15
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor19.4
p_staggered_tor13.3
p_scangle_it4.101
p_planar_tor3.9
p_scbond_it2.714
p_mcangle_it2.009
p_mcbond_it1.253
p_multtor_nbd0.25
p_singtor_nbd0.177
p_chiral_restr0.15
p_hb_or_metal_coord0.132
p_angle_d0.028
p_planar_d0.028
p_bond_d0.019
p_plane_restr0.01
p_angle_deg
p_xhyhbond_nbd
p_xyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1831
Nucleic Acid Atoms
Solvent Atoms233
Heterogen Atoms6

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
REFMACphasing