1H9J

Two crystal structures of the cytoplasmic molybdate-binding protein ModG suggest a novel cooperative binding mechanism and provide insights into ligand-binding specificity. Phosphate-grown form with molybdate and phosphate bound


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION8.5VAPOUR DIFFUSION. 75% SATURATED KH2PO4 IN 100MM TRIS-HCL PH8.5 WITH 2MM NA2MOO4., pH 8.50
Crystal Properties
Matthews coefficientSolvent content
1.3440

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 50.685α = 90
b = 50.685β = 90
c = 79.112γ = 120
Symmetry
Space GroupP 3 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH1998-04-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-3ESRFID14-3

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.84498.70.0458.63.810144-319.3
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.81.998.10.0925.13

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.8401014454398.70.20.266RANDOM22
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor44.8
p_staggered_tor12.8
p_scangle_it6.732
p_scbond_it5.173
p_planar_tor3.8
p_mcangle_it3.754
p_mcbond_it3.023
p_multtor_nbd0.257
p_singtor_nbd0.175
p_xyhbond_nbd0.163
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor44.8
p_staggered_tor12.8
p_scangle_it6.732
p_scbond_it5.173
p_planar_tor3.8
p_mcangle_it3.754
p_mcbond_it3.023
p_multtor_nbd0.257
p_singtor_nbd0.175
p_xyhbond_nbd0.163
p_chiral_restr0.128
p_planar_d0.037
p_angle_d0.034
p_plane_restr0.0225
p_bond_d0.013
p_angle_deg
p_hb_or_metal_coord
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1004
Nucleic Acid Atoms
Solvent Atoms77
Heterogen Atoms18

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
MLPHAREphasing