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Pseudomonas cellulosa E292A alpha-D-glucuronidase mutant complexed with aldotriuronic acid
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GQI PDB ENTRY 1GQI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8 15% PEG3350, 250MM MGCL2, 5MM TRIS-HCL PH8.0, 20% GLYCEROL, pH 8.00
Crystal Properties Matthews coefficient Solvent content 2.4 48.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 69.412 α = 115.09 b = 74.393 β = 93.04 c = 87.462 γ = 109.44
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2001-12-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-4 ESRF ID14-4
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.5 20 91.2 0.041 20.06 2.7 212953
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.5 1.53 52.9 0.215 4.23 2.5
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1GQI 1.5 20 211429 1679 91.2 0.118 0.118 0.1516 0.153 RANDOM 12.76
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.03 -0.05 -0.45 -0.71 -0.48 -0.8
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.375 r_dihedral_angle_4_deg 19.95 r_dihedral_angle_3_deg 12.645 r_dihedral_angle_1_deg 5.897 r_scangle_it 3.955 r_scbond_it 2.744 r_angle_other_deg 2.205 r_mcangle_it 1.968 r_mcbond_it 1.363 r_symmetry_vdw_other 0.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 33.375 r_dihedral_angle_4_deg 19.95 r_dihedral_angle_3_deg 12.645 r_dihedral_angle_1_deg 5.897 r_scangle_it 3.955 r_scbond_it 2.744 r_angle_other_deg 2.205 r_mcangle_it 1.968 r_mcbond_it 1.363 r_symmetry_vdw_other 0.33 r_nbd_other 0.263 r_nbd_refined 0.229 r_symmetry_vdw_refined 0.139 r_symmetry_hbond_refined 0.139 r_chiral_restr 0.124 r_xyhbond_nbd_refined 0.12 r_nbtor_other 0.107 r_metal_ion_refined 0.069 r_gen_planes_refined 0.009 r_gen_planes_other 0.004 r_bond_other_d 0.003 r_bond_refined_d r_angle_refined_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 11233 Nucleic Acid Atoms Solvent Atoms 1667 Heterogen Atoms 150
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling