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Factor Inhibiting HIF-1 alpha in complex with HIF-1 alpha fragment peptide
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 1.2M AMMONIUM SULPHATE, 4% PEG400, 0.1M HEPES PH7.5, 11MG/ML PROTEIN WITH 1MM ZN(II), 2.5MM NOG AND 2.5MM PEPTIDE, pH 7.50
Crystal Properties Matthews coefficient Solvent content 3.4 63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 86.249 α = 90 b = 86.249 β = 90 c = 148.26 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD 2002-05-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.6 SRS PX9.6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 87.71 99.7 0.05 10.7 6.5 20058
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.5 2.64 97.9 0.289 2.6 4.4
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.5 18 18404 1516 99.7 0.194 0.192 0.2016 0.225 0.2353 RANDOM 35.78
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.68 -0.68 1.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 18.015 r_dihedral_angle_1_deg 4.024 r_scangle_it 3.678 r_scbond_it 2.22 r_angle_refined_deg 1.612 r_mcangle_it 1.421 r_angle_other_deg 0.832 r_mcbond_it 0.761 r_symmetry_vdw_other 0.255 r_symmetry_hbond_refined 0.244
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 18.015 r_dihedral_angle_1_deg 4.024 r_scangle_it 3.678 r_scbond_it 2.22 r_angle_refined_deg 1.612 r_mcangle_it 1.421 r_angle_other_deg 0.832 r_mcbond_it 0.761 r_symmetry_vdw_other 0.255 r_symmetry_hbond_refined 0.244 r_nbd_refined 0.232 r_nbd_other 0.214 r_symmetry_vdw_refined 0.194 r_xyhbond_nbd_refined 0.173 r_xyhbond_nbd_other 0.126 r_chiral_restr 0.097 r_metal_ion_refined 0.054 r_symmetry_hbond_other 0.053 r_bond_refined_d 0.017 r_gen_planes_refined 0.006 r_gen_planes_other 0.002 r_bond_other_d 0.001 r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_nbtor_refined r_nbtor_other r_metal_ion_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2859 Nucleic Acid Atoms Solvent Atoms 99 Heterogen Atoms 21
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction SCALA data scaling