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Hydrogenase Maturation Protein HypF "acylphosphatase-like" N-terminal domain (HypF-ACP) in complex with Sulfate
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.5 pH 8.50
Crystal Properties Matthews coefficient Solvent content 2.52 51.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 58.095 α = 90 b = 58.095 β = 90 c = 155.645 γ = 120
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7B EMBL/DESY, HAMBURG BW7B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 20 92.9 0.057 16.3 10.5 28517 2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SIRAS THROUGHOUT 1.27 10 23971 1269 93.3 0.136 0.134 0.2091 0.168 0.2249 RANDOM 16.94
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.29 0.64 1.29 -1.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 19.729 r_scangle_it 9.774 r_scbond_it 8.06 r_mcangle_it 5.649 r_dihedral_angle_1_deg 5.604 r_mcbond_it 4.233 r_angle_other_deg 2.514 r_angle_refined_deg 2.048 r_symmetry_hbond_refined 0.38 r_xyhbond_nbd_other 0.336
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 19.729 r_scangle_it 9.774 r_scbond_it 8.06 r_mcangle_it 5.649 r_dihedral_angle_1_deg 5.604 r_mcbond_it 4.233 r_angle_other_deg 2.514 r_angle_refined_deg 2.048 r_symmetry_hbond_refined 0.38 r_xyhbond_nbd_other 0.336 r_symmetry_vdw_other 0.322 r_symmetry_vdw_refined 0.313 r_nbd_refined 0.24 r_nbd_other 0.239 r_xyhbond_nbd_refined 0.237 r_chiral_restr 0.16 r_bond_refined_d 0.02 r_gen_planes_refined 0.02 r_gen_planes_other 0.004 r_bond_other_d r_dihedral_angle_2_deg r_dihedral_angle_4_deg r_nbtor_refined r_nbtor_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_mcangle_other r_scbond_other r_scangle_other r_long_range_B_refined r_long_range_B_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 713 Nucleic Acid Atoms Solvent Atoms 145 Heterogen Atoms 14
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling autoSHARP phasing