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CRYSTAL STRUCTURE OF C-MYB R1
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1MBE PDB ENTRY 1MBE
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 6.8 1.6-1.7 M SODIUM CITRATE PH 6.8, PROTEIN CONCENTRATION 15 MG/ML, CRYSTAL WAS TRANSFORMED TO LOW HUMIDITY FORM AND FLASH COOLED, 1-2% V/V OF GLYCEROL WAS ADDED TO PREVENT THE CRYSTAL CRACKING DURING THE FLASH COOLING
Crystal Properties Matthews coefficient Solvent content 1.76 30.16
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 26.273 α = 90 b = 35.303 β = 93.37 c = 24.039 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE RIGAKU RAXIS IV 1999-04-27 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SPRING-8 BEAMLINE BL44B2 SPring-8 BL44B2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.6 20 93.9 0.077 14.653 2.959 5574 18.9
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.6 1.66 72.5 0.204 2.279 2.43
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1MBE 1.6 19.85 5531 306 94 0.192 0.192 0.1968 0.223 RANDOM 22.9
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 6.44 -3.84 -4.79 -1.65
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 18.4 c_scangle_it 4.98 c_scbond_it 3.23 c_mcangle_it 2.86 c_mcbond_it 1.84 c_angle_deg 0.9 c_improper_angle_d 0.62 c_bond_d 0.004 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 18.4 c_scangle_it 4.98 c_scbond_it 3.23 c_mcangle_it 2.86 c_mcbond_it 1.84 c_angle_deg 0.9 c_improper_angle_d 0.62 c_bond_d 0.004 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 433 Nucleic Acid Atoms Solvent Atoms 42 Heterogen Atoms 1
Software Software Software Name Purpose CNS refinement DENZO data reduction SCALEPACK data scaling X-PLOR phasing