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Type II Dehydroquinase from Bacillus subtilis
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details other STREPTOMYCES COELICOLOR DODECAMER
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 8.2 5% PEG8K, 0.05M CACL2, 0.1M TRIS PH 8.5
Crystal Properties Matthews coefficient Solvent content 2.43 49.31
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 97.21 α = 90 b = 195.61 β = 91.87 c = 97.36 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC CCD MIRRORS 1999-09-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX9.6 SRS PX9.6
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.1 21.84 82.5 0.102 2.9 174109 31.62
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.1 2.4 64.2 1 1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT STREPTOMYCES COELICOLOR DODECAMER 2.1 21.84 210733 86 0.201 0.259 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 38.3 p_staggered_tor 17.6 p_planar_tor 4 p_scangle_it 2.917 p_mcangle_it 2.751 p_scbond_it 1.802 p_mcbond_it 1.665 p_multtor_nbd 0.292 p_singtor_nbd 0.189 p_chiral_restr 0.147
RMS Deviations Key Refinement Restraint Deviation p_transverse_tor 38.3 p_staggered_tor 17.6 p_planar_tor 4 p_scangle_it 2.917 p_mcangle_it 2.751 p_scbond_it 1.802 p_mcbond_it 1.665 p_multtor_nbd 0.292 p_singtor_nbd 0.189 p_chiral_restr 0.147 p_planar_d 0.041 p_angle_d 0.039 p_bond_d 0.016 p_plane_restr 0.014 p_angle_deg p_hb_or_metal_coord p_xhyhbond_nbd p_xyhbond_nbd p_orthonormal_tor p_special_tor
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 26100 Nucleic Acid Atoms Solvent Atoms 2202 Heterogen Atoms 430
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing