1GJ2

CO(III)-BLEOMYCIN-OOH BOUND TO AN OLIGONUCLEOTIDE CONTAINING A PHOSPHOGLYCOLATE LESION


SOLUTION NMR
NMR Experiment
ExperimentTypeSample ContentsSolventIonic StrengthpHPressureTemperature (K)Spectrometer
1NOESY1.25 mM drug-DNA complex; 40 mM sodium phosphate bufferD2O40 mM sodium phosphate buffer6.8ambient293
2TOCSY1.25 mM drug-DNA complex; 40 mM sodium phosphate bufferD2O40 mM sodium phosphate buffer6.8ambient293
3PE-COSY1.25 mM drug-DNA complex; 40 mM sodium phosphate bufferD2O40 mM sodium phosphate buffer6.8ambient293
4WATERGATE-NOESY1.25 mM drug-DNA complex; 40 mM sodium phosphate bufferD2O40 mM sodium phosphate buffer6.8ambient293
531P- HCOSY1.25 mM drug-DNA complex; 40 mM sodium phosphate bufferD2O40 mM sodium phosphate buffer6.8ambient293
613C-HSQC1.25 mM drug-DNA complex; 40 mM sodium phosphate bufferD2O40 mM sodium phosphate buffer6.8ambient293
7ROESY1.25 mM drug-DNA complex; 40 mM sodium phosphate bufferD2O40 mM sodium phosphate buffer6.8ambient293
NMR Spectrometer Information
SpectrometerManufacturerModelField Strength
1Home-builtHOME-BUILT750
2Home-builtHOME-BUILT600
NMR Refinement
MethodDetailsSoftware
molecular dynamicsTHE STRUCTURES ARE BASED ON 729 NOE-DERIVED DISTANCE CONSTRAINTS AND 96 DIHEDRAL ANGLE RESTRAINTS.Felix
NMR Ensemble Information
Conformer Selection Criteria
Conformers Calculated Total Number
Conformers Submitted Total Number1
Additional NMR Experimental Information
DetailsDNA WAS SYNTHESIZED AS A DOUBLE HAIRPIN, BUT FOR MODELING PURPOSED WAS TREATED AS TWO STRANDS OF DNA; THE HEXAETHYLENE GLYCOL SPACERS WERE NOT INCLUDED IN THE MODELING
Computation: NMR Software
#ClassificationVersionSoftware NameAuthor
1processingFelix95.0MSI
2structure solutionX-PLOR3.851Brunger
3data analysisFelix95.0MSI
4refinementX-PLOR3.851Brunger