1FYO
EUKARYOTIC DECODING REGION A-SITE RNA
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 3 mM decoding site RNA, 13C/15N, 10 mM phosphate pH 6.3, 90% H20/10% D20, 100% D20 | 90% H2O/10% D20; 100% D2O | 10 mM | 6.3 | 1 atm | 298 | |
2 | 3D_13C-separated_NOESY | 3 mM decoding site RNA, 13C/15N, 10 mM phosphate pH 6.3, 90% H20/10% D20, 100% D20 | 90% H2O/10% D20; 100% D2O | 10 mM | 6.3 | 1 atm | 298 | |
3 | 3D_15N-separated_NOESY | 3 mM decoding site RNA, 13C/15N, 10 mM phosphate pH 6.3, 90% H20/10% D20, 100% D20 | 90% H2O/10% D20; 100% D2O | 10 mM | 6.3 | 1 atm | 298 | |
4 | 4D_13C-separated_NOESY | 3 mM decoding site RNA, 13C/15N, 10 mM phosphate pH 6.3, 90% H20/10% D20, 100% D20 | 90% H2O/10% D20; 100% D2O | 10 mM | 6.3 | 1 atm | 298 | |
5 | DQF-COSY | 3 mM decoding site RNA, 13C/15N, 10 mM phosphate pH 6.3, 90% H20/10% D20, 100% D20 | 90% H2O/10% D20; 100% D2O | 10 mM | 6.3 | 1 atm | 298 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 500 |
2 | Varian | INOVA | 800 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing molecular dynamics | 682 NOEs, 129 dihedral constraints, 36 Hydrogen bonds | X-PLOR |
NMR Ensemble Information | |
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Conformer Selection Criteria | structures with the least restraint violations,structures with the lowest energy |
Conformers Calculated Total Number | 100 |
Conformers Submitted Total Number | 25 |
Representative Model | 12 (n/a) |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | refinement | X-PLOR | 3.83 | Brunger |
2 | structure solution | X-PLOR | 3.83 | Brunger |
3 | processing | VNMR | 6.1 | |
4 | processing | Felix | 6.1 |