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SOLUTION STRUCTURE OF MULTI-FUNCTIONAL PEPTIDE MOTIF-1 PRESENT IN HUMAN GLUTAMYL-PROLYL TRNA SYNTHETASE (EPRS).
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | ~2mM EPRS-R1 U-15N; 90% H2O, 10% D2O | 90% H2O/10% D2O | no salt | 5.0 | ambient | 303 | |
2 | 3D_15N-separated_NOESY | ~2mM EPRS-R1 U-15N; 90% H2O, 10% D2O | 90% H2O/10% D2O | no salt | 5.0 | ambient | 303 | |
3 | DQF-COSY | ~2mM EPRS-R1 U-15N; 90% H2O, 10% D2O | 90% H2O/10% D2O | no salt | 5.0 | ambient | 303 | |
4 | HNHA | ~2mM EPRS-R1 U-15N; 90% H2O, 10% D2O | 90% H2O/10% D2O | no salt | 5.0 | ambient | 303 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | UNITY | 600 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
distance geometry simulated annealing | 814 NOE-derived distance constraints, 91 dihedral angle restraints,29 hydrogen bonds restraints, and 49 J coupling constants are used. | NMRPipe |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | structures with the lowest energy |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 20 |
Representative Model | 6 (closest to the average) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | processing | NMRPipe | 1.7 | Delaglio,F. |
2 | data analysis | PIPP | 4.2.5 | Garretr, D. |
3 | structure solution | X-PLOR | 3.851 | Bunger, A.T. |
4 | refinement | X-PLOR | 3.851 | Bunger, A.T. |