STRUCTURAL BASIS OF THE RECOGNITION OF THE DISHEVELLED DEP DOMAIN IN THE WNT SIGNALING PATHWAY
SOLUTION NMR
| NMR Experiment | ||||||||
|---|---|---|---|---|---|---|---|---|
| Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
| 1 | 3D_13C-separated_NOESY | 0.8-1.5mM DEP, 15N and 13C labeled, 100mM phosphate buffer (pH 6.8), 0.1mM NaN3, 3mM DTT | 90% H2O/10% D2O | 0.1 | 6.8 | ambient | 300 | |
| 2 | HNHA | 0.8-1.5mM DEP, 15N labeled, 100mM phosphate buffer (pH 6.8), 0.1mM NaN3, 3mM DTT | 90% H2O/10% D2O | 0.1 | 6.8 | ambient | 300 | |
| 3 | 3D_15N-separated_NOESY | 0.8-1.5mM DEP, 15N labeled, 100mM phosphate buffer (pH 6.8), 0.1mM NaN3, 3mM DTT | 90% H2O/10% D2O | 0.1 | 6.8 | ambient | 300 | |
| 4 | 3D_15N-separated_NOESY | 0.8-1.5mM DEP, valine selective 15N labeled, 100mM phosphate buffer (pH 6.8), 0.1mM NaN3, 3mM DTT | 90% H2O/10% D2O | 0.1 | 6.8 | ambient | 300 | |
| 5 | 2D NOESY | 0.8-1.5mM DEP, 15N labeled, 100mM phosphate buffer (pH 6.8), 0.1mM NaN3, 3mM DTT | 90% H2O/10% D2O | 0.1 | 6.8 | ambient | 300 | |
| 6 | HMQC | 0.8-1.5mM DEP, 15N labeled, 100mM phosphate buffer (pH 6.8), 0.1mM NaN3, 3mM DTT | 100% D2O | 0.1 | 6.8 | ambient | 300 | |
| NMR Spectrometer Information | |||
|---|---|---|---|
| Spectrometer | Manufacturer | Model | Field Strength |
| 1 | Varian | INOVA | 600 |
| NMR Refinement | ||
|---|---|---|
| Method | Details | Software |
| torsion angle dynamics | The structural calculations are based on 2009 NOE distance restraints, 54 hydrogen-bond distance restraints, and 40 dihedral angle restraints | DYANA |
| NMR Ensemble Information | |
|---|---|
| Conformer Selection Criteria | target function |
| Conformers Calculated Total Number | 1000 |
| Conformers Submitted Total Number | 20 |
| Representative Model | 1 (lowest target function) |
| Additional NMR Experimental Information | |
|---|---|
| Details | The structure was determined using triple-resonance NMR spectroscopy. |
| Computation: NMR Software | ||||
|---|---|---|---|---|
| # | Classification | Version | Software Name | Author |
| 1 | refinement | DYANA | 1.5 | Guntert, P. |
| 2 | processing | Felix | 98 | Molecular Simulations, Inc. |
| 3 | data analysis | XEASY | 1.3.13 | Xia, T.-H. |
| 4 | structure solution | DYANA | 1.5 | Guntert, P. |














