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STRUCTURE OF THE SECOND EPS15 HOMOLOGY DOMAIN OF HUMAN EPS15 IN COMPLEX WITH PTGSSSTNPFL
SOLUTION NMR
NMR Experiment | ||||||||
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Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 2D NOESY | 1 MM {15N}-EH2 AND 5 MM PEPTIDE, 20 MM PERDEUTERATED TRIS, 100 MM POTASSIUM CHLORIDE, 1 MM PERDEUTERATED DTT, 1 MM SODIUM AZIDE, 2 MM CALCIUM CHLORIDE | 90% H2O/10% D2O | 0.15 | 7.00 | AMBIENT | 298.00 | |
2 | 3D_15N- SEPARATED_NOESY | 1 MM {15N}-EH2 AND 5 MM PEPTIDE, 20 MM PERDEUTERATED TRIS, 100 MM POTASSIUM CHLORIDE, 1 MM PERDEUTERATED DTT, 1 MM SODIUM AZIDE, 2 MM CALCIUM CHLORIDE | 90% H2O/10% D2O | 0.15 | 7.00 | AMBIENT | 298.00 |
NMR Spectrometer Information | |||
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Spectrometer | Manufacturer | Model | Field Strength |
1 | Varian | INOVA | 500 |
2 | Varian | INOVA | 600 |
NMR Refinement | ||
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Method | Details | Software |
simulated annealing | THE R-6 SUMMATION METHOD WAS USED WITHIN A SIMULATED ANNEALING PROTOCOL. Although the NMR data was collected on an 11-mer, PTGSSSTNPFL, NOEs were absent for the N-terminal 6 residues. The structures were therefore calculated with the peptide fragment STNPFL. | VNMR |
NMR Ensemble Information | |
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Conformer Selection Criteria | 20 LOWEST NOE ENERGIES |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 20 |
Representative Model | 1 (lowest energy) |
Additional NMR Experimental Information | |
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Details | DATA WAS COLLECTED ON A 15N-LABELLED EH2 SAMPLE IN THE PRESENCE OF SYNTHETIC UNLABELLED PTGSSSTNPFL AND CALCIUM |
Computation: NMR Software | ||||
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# | Classification | Version | Software Name | Author |
1 | structure solution | VNMR | 6.1 | varian |
2 | structure solution | NMRPipe | 1 | Delaglio |
3 | structure solution | X-PLOR | 3.85 | Brunger |
4 | refinement | X-PLOR | 3.85 | Brunger |